Publications

Journal

SpikeInterface, a unified framework for spike sorting
eLife (2020)
Alessio P. Buccino1, Cole L. Hurwitz1, Jeremy Magland, Samuel Garcia, Joshua H. Siegle, Roger Hurwitz, Matthias H. Hennig.

SpikeForest: reproducible web-facing ground-truth validation of automated neural spike sorters
eLife (2020)
Jeremy F. Magland, James J. Jun, Elizabeth Lovero, Cole L. Hurwitz, Alessio P. Buccino, Samuel Garcia, and Alex H. Barnett.

MEArec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity
Neuroinformatics (2020)
Alessio P. Buccino and Gaute T. Einevoll

Experimental Pipeline (Expipe): A Lightweight Data Management Platform to Simplify the Steps From Experiment to Data Analysis
Neuroinformatics (2020)
Mikkel E. Lepperød, Svenn-Arne Dragly, Alessio P. Buccino, Milad H. Mobarhan, Anders Malthe-Sørenssen, Torkel Hafting, and Marianne Fyhn

How does the presence of neural probes affect extracellular recordings?
Journal of Neural Engineering (2019)
Alessio P. Buccino, Miroslav Kuchta, Karoline H. Jæger, Torbjørn V. Ness, Pierre Berthet, Kent-Andre Mardal, Gert Cauwenberghs, and Aslak Tveito

Combining biophysical modeling and deep learning for multielectrode array neuron localization and classification
Journal of Neurophysiology (2018)
Alessio P. Buccino1, Michael Kordovan1, Torbjørn V. Ness, Benjamin Merkt, Philipp D. Häfliger, Marianne Fyhn, Gert Cauwenberghs, Stefan Rotter, and Gaute T. Einevoll. (1. equal contribution).

Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai
Journal of Neural Engineering (2018)
Alessio P. Buccino, Mikkel E. Lepperød, Svenn-Arne Dragly, Philipp D. Häfliger, Marianne Fyhn, and Torkel Hafting

Hybrid EEG-fNIRS Asynchronous Brain-Computer Interface for Multiple Motor Tasks
Plos One (2016)
Alessio P. Buccino, Hasan O. Keles, and Ahmet Omurtag

Preprints

Electrophysiological Phenotype Characterization of Human iPSC-Derived Neuronal Cell Lines by Means of High-Density Microelectrode Arrays
bioRxiv (2020)
Silvia Ronchi, Alessio P. Buccino, Gustavo Prack, Sreedhar S. Kumar, Manuel Schröter, Michele Fiscella, and Andreas Hierlemann</b>.

Conference

Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference
Advances in Neural Information Processing Systems 2019 (NeurIPS 2019)
Cole L. Hurwitz, Kai Xu, Akash Srivastava, Alessio P. Buccino, Matthias H. Hennig.

Real-time spike sorting for multi-electrode arrays with online independent component analysis
IEEE Biomedical Circuits and Systems Conference (BioCAS 2018)
Alessio P. Buccino, Sheng-Hsiou Hsu, and Gert Cauwenberghs

Independent component analysis for fully automated multi-electrode array spike sorting
IEEE Engineering in Medicine and Biology Society (EMBC 2018)
Alessio P. Buccino, Espen Hagen, Gaute T. Einevoll, Philipp D. Häfliger, and Gert Cauwenberghs

A deep learning approach for the classification of neuronal cell types
IEEE Engineering in Medicine and Biology Society (EMBC 2018)
Alessio P. Buccino, Torbjørn V. Ness, Gaute T. Einevoll, Gert Cauwenberghs, and Philipp D. Häfliger

Localizing neuronal somata from multi-electrode array in-vivo recordings using deep learning
IEEE Engineering in Medicine and Biology Society (EMBC 2017)
Alessio P. Buccino, Torbjørn V. Ness, Gaute T. Einevoll, Gert Cauwenberghs, and Philipp D. Häfliger

Extracellular single neuron stimulation with high-density multi-electrode array
IEEE Biomedical Circuits and Systems Conference (BioCAS 2016)
Alessio P. Buccino, Tristan Stöber, Solveig Næss, Gert Cauwenberghs, and Philipp D. Häfliger

Book Chapters

Improving Neural Simulations with the EMI Model
Modeling Excitable Tissue. Simula SpringerBriefs on Computing (2020)
Alessio P. Buccino, Miroslav Kuchta, Jakob Schreiner, and Kent-André Mardal

Biopotential Measurements and Electrodes
Neural Engineering. Springer (2020)
Abraham Akinin, Akshay Paul, Jun Wang, Alessio P. Buccino, and Gert Cauwenberghs

PhD Thesis

A computationally-assisted approach to extracellular neural electrophysiology with multi-electrode arrays
PhD thesis, University of Oslo (2020)
Alessio P. Buccino

Master Thesis

Development of a hybrid EEG-NIRS brain computer interface for multiple motor tasks
Master thesis, Polytechnic University of Milan (2015)
Alessio P. Buccino